个人基本信息
姓名：姚文
性别：男
职称：校聘教授、拔尖人才、硕士生导师
邮编：450002
通讯地址：河南省郑州市金水区文化路95号 新葡京娱乐场官方
E-mail：yaowen at xpjcasino.net
教育经历
2006年9月 – 2010年6月，武汉大学 数学与统计新葡京娱乐场
信息与计算科学专业2010年9月 – 2016年12月，华中农业大学生命科学技术新葡京娱乐场 生物化学与分子生物学专业
教授课程
生物实验设计与统计，生物信息学
主要研究领域
生物信息学，植物基因组学
发表论文
- Yu Y+, Yao W+?, Wang Y, Huang F. shinyChromosome: An R/Shiny Application for Interactive Creation of Non-circular Plots of Whole Genomes. Genomics, Proteomics & Bioinformatics, 2020 (+ co-first author)
- Zhou W, Wang L, Zheng W?, Yao W?. MaizeSNPDB: a comprehensive database for efficient retrieve and analysis of SNPs among 1210 maize lines. Computational and Structural Biotechnology Journal, 2019
- Yao W+, Li G+, Cui Y, Yu Y, Zhang Q?, Xu S?. Mapping quantitative trait loci using binned genotypes. Journal of Genetics and Genomics, 2019 (+ co-first author)
- Yao W?, Huang F, Zhang X, Tang J?. ECOGEMS: efficient compression and retrieve of SNP data of 2058 rice accessions with integer sparse matrices. Bioinformatics, 2019
- Yao W?, Li G, Yu Y, Ouyang Y?. funRiceGenes dataset for comprehensive understanding and application of rice functional genes. GigaScience, 2017
- Yu Y, Ouyang Y?, Yao W?. shinyCircos: an R/Shiny application for interactive creation of Circos plot. Bioinformatics, 2017
- Yao W, Li G, Zhao H, Wang G, Lian X, Xie W?. Exploring the rice dispensable genome using a metagenome-like assembly strategy. Genome Biology, 2015
- Wang J+, Yao W+, Zhu D, Xie W, Zhang Q?. Genetic basis of sRNA quantitative variation analyzed using an experimental population derived from an elite rice hybrid. eLife, 2015 (+ co-first author)
- Peter Brown, RELISH Consortium, Yaoqi Zhou. Large expert-curated database for benchmarking document similarity detection in biomedical literature search. Database, 2019
- Luo X, Li H, Wu Z, Yao W, Zhao P, Cao D, Yu H, Li K, Poudel K, Zhao D, Zhang F, Xia X, Chen L, Wang Q, Jing D, Cao S. The pomegranate (Punica granatum L.) draft genome dissects genetic divergence between soft- and hard-seeded cultivars. Plant Biotechnology Journal, 2019
- Wang X+, Yu C+, Liu Y, Yang L, Li Y, Yao W, Cai Y, Yan X, Li S, Cai Y, Li S, Peng X?. GmFAD3A, A ω-3 Fatty Acid Desaturase Gene, Enhances Cold Tolerance and Seed Germination Rate under Low Temperature in Rice. Int. J. Mol. Sci., 2019 (+ co-first author)
- Su H+, Cao Y+, Ku L+?, Yao W, Cao Y, Ren Z, Dou D, Wang H, Ren Z, Liu H, Tian L, Zheng Y, Chen C, Chen Y?. Dual functions of ZmNF-YA3 in photoperiod-dependent flowering and abiotic stress responses in maize. J Exp Bot, 2018 (+ co-first author)
- Dong H, Zhao H, Xie W, Han Z, Li G, Yao W, Bai X, Hu Y, Guo Z, Lu K, Yang L, Xing Y?. A Novel Tiller Angle Gene, TAC3, together with TAC1 and D2 Largely Determine the Natural Variation of Tiller Angle in Rice Cultivars. PLoS Genetics, 2016
- Zhang J+, Chen L-L+, Xing F+, Kudrna DA, Yao W, Copetti D, Mu T, Li W, Song J-M, Xie W, Lee S, Talag J, Shao L, An Y, Zhang C-L, Ouyang Y, Sun S, Jiao W-B, Lv F, Du B, Luo M, Maldonado C, Goicoechea J, Xiong L, Wu C, Xing Y, Zhou D, Yu S, Zhao Y, Wang G, Yu Y, Luo Y, Zhou Z, Hurtado B, Danowitz A, Wing R?, Zhang Q?. Extensive sequence divergence between the reference genomes of two elite indica rice varieties Zhenshan 97 and Minghui 63. Proc Natl Acad Sci U S A, 2016 (+ co-first author)
- Magwa R, Zhao H, Yao W, Xie W, Yang L, Xing Y, Bai X?. Genome-wide association analysis for awn length linked to the seed shattering gene qSH1 in rice. J Genet, 2016
- Li Q, Yan W, Chen H, Tan C, Han Z, Yao W, Li G, Yuan M, Xing Y?. Duplication of OsHAP family genes and their association with heading date in rice. J Exp Bot, 2016
- Zhao H, Yao W, Ouyang Y, Yang W, Wang G, Lian X, Xing Y, Chen L, Xie W?. RiceVarMap: a comprehensive database of rice genomic variations. Nucleic Acids Res, 2015
- Zhang L+, Mao D+, Xing F, Bai X, Zhao H, Yao W, Li G, Xie W, Xing Y?. Loss of function of OsMADS3 via the insertion of a novel retrotransposon leads to recessive male sterility in rice (Oryza sativa). Plant Sci, 2015 (+ co-first author)
- Zhang L, Li Q, Dong H, He Q, Liang L, Tan C, Han Z, Yao W, Li G, Zhao H, Xie W, Xing Y?. Three CCT domain-containing genes were identified to regulate heading date by candidate gene-based association mapping and transformation in rice. Sci Rep, 2015
- Yang Z, Ma H, Hong H, Yao W, Xie W, Xiao J, Li X, Wang S?. Transcriptome-based analysis of mitogen-activated protein kinase cascades in the rice response to Xanthomonas oryzae infection. Rice, 2015
- Xie W+, Wang G+, Yuan M, Yao W, Lyu K, Zhao H, Yang M, Li P, Zhang X, Yuan J, Wang Q, Liu F, Dong H, Zhang L, Li X, Meng X, Zhang W, Xiong L, He Y, Wang S, Yu S, Xu C, Luo J, Li X, Xiao J, Lian X?, Zhang Q?. Breeding signatures of rice improvement revealed by a genomic variation map from a large germplasm collection. Proc Natl Acad Sci U S A, 2015 (+ co-first author)
- Peng B+, Kong H+, Li Y, Wang L, Zhong M, Sun L, Gao G, Zhang Q, Luo L, Wang G, Xie W, Chen J, Yao W, Peng Y, Lei L, Lian X, Xiao J, Xu C, Li X, He Y?. OsAAP6 functions as an important regulator of grain protein content and nutritional quality in rice. Nat Commun, 2014 (+ co-first author)
- Yan W+, Liu H+, Zhou X, Li Q, Zhang J, Lu L, Liu T, Liu H, Zhang C, Zhang Z, Shen G, Yao W, Chen H, Yu S, Xie W, Xing Y?. Natural variation in Ghd7.1 plays an important role in grain yield and adaptation in rice. Cell Res, 2013 (+ co-first author)
- Wang N, Long T, Yao W, Xiong L, Zhang Q, Wu C?. Mutant resources for the functional analysis of the rice genome. Mol Plant, 2013
- Zhou G, Chen Y, Yao W, Zhang C, Xie W, Hua J, Xing Y, Xiao J, Zhang Q?. Genetic composition of yield heterosis in an elite rice hybrid. Proc Natl Acad Sci U S A, 2012
